Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs12522724 chr5:590742 T/C 0 100 15.02 14.8 6.33 KM Plot
SKCM rs12533765 chr7:127699186 A/G 3.86E-5 101 14.8 16.28 10.52 KM Plot
SKCM rs12580997 chr12:63433420 G/A 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs12593793 chr15:76620088 A/G 5.93E-13 99 14.5 18.45 6.33 KM Plot
SKCM rs12676061 chr8:143452415 A/T 6.55E-5 101 15.38 15.65 10.87 KM Plot
SKCM rs12679308 chr8:29748756 C/G 0 101 6.33 15.08 14.85 KM Plot
SKCM rs12693216 chr2:180839793 T/A 2.92E-5 101 9 13.72 15.3 KM Plot
SKCM rs12882382 chr14:100924312 G/A 0.000106 100 15.13 16.35 12.27 KM Plot
SKCM rs13085908 chr3:35832983 C/T 2.52E-5 101 9.7 20.37 14.28 KM Plot
SKCM rs13194962 chr6:158647345 C/T 3.4E-5 99 15.3 13.07 4.73 KM Plot
SKCM rs138311534 chr2:180870895 GTC/G 3.03E-5 100 15.13 14.23 9 KM Plot
SKCM rs1386823 chr3:35874487 A/G 7.19E-5 98 14.67 20.37 9.7 KM Plot
SKCM rs1399381 chr5:589853 G/T 0 100 15.02 14.8 6.33 KM Plot
SKCM rs139953824 chr5:595021 G/GA 0 99 15.13 12 6.33 KM Plot
SKCM rs140678565 chr15:85289921 C/T 9.41E-6 100 15.98 13.57 10.95 KM Plot